Sapphire

Hi, I am using barrnap for 16s rRNA extraction and it show me this result without creating any output. Tseemann sir i am big fan of you. First of all...

roary : Depends: r-cran-ggplot2 but it is not going to be installed E: Unable to correct problems, you have held broken packages.

4

Hi, i am trying to install roary but it gives this error ? could you please help me? roary : Depends: r-cran-ggplot2 but it is not going to be installed...

ValueError: zero-size array to reduction operation minimum which has no identity

9

#### Summary: Hi, I am trying to run pyani but it gives some error in description. **ValueError: zero-size array to reduction operation minimum which has no identity** #### Description: ```python...

Hi, i am trying to run snippy regarding SNP analysis and it give following error, please have a look **snippy-multi /home/bvs/Neelam/annotated/fna/input.tab --reference /home/bvs/Neelam/annotated/gbk/P_aeruginosa_PAO1.gbk --cpus 16 > out** Reading: /home/bvs/Neelam/annotated/fna/input.tab ERROR:...

Hi, i am trying to run snippy regarding SNP analysis and it give following error, please have a look **snippy-multi /home/bvs/Neelam/annotated/fna/input.tab --reference /home/bvs/Neelam/annotated/gbk/P_aeruginosa_PAO1.gbk --cpus 16 > out** Reading: /home/bvs/Neelam/annotated/fna/input.tab ERROR:...

No output given by FastANI

5

**fastANI --threads 2 -q /home/neel@m95/Desktop/AMR/annotated/fna1/fna -r /home/neel@m95/Desktop/AMR/annotated/fna1/fna --fragLen 50 --matrix -o outdir/all_out** >>>>>>>>>>>>>>>>>> Reference = [/home/neel@m95/Desktop/AMR/annotated/fna1/fna] Query = [/home/neel@m95/Desktop/AMR/annotated/fna1/fna] Kmer size = 16 Fragment length = 50 Threads = 2...

Hi, i am using rgi model of CARD database to draw a heatmap of presence and absence of gene and it giving following error. Traceback (most recent call last): File...

Hi, i am trying to run rgi heatmap and it gives following error. **rgi heatmap --input /home/bvs/Neelam/rgi/res_test --output out** Traceback (most recent call last): File "/home/bvs/.local/bin/rgi", line 4, in MainBase()...

Hi i am using Clinker and it gives following error- clinker P_aeruginosa_AR_0110.gbk P_aeruginosa_AR_0111.gbk P_aeruginosa_AR_455.gbk P_aeruginosa_ATCC_15692.gbk -r 4_dataforcli.txt -o out_4 -i 70 -p 4_plot.html [15:35:03] INFO - Starting clinker [15:35:03] ERROR...

can anyone explain, what is mean by evidence column in SNIPPY?

1

Hi, Does anyone tell me how the evidence column is calculated in the SNIPPY tool? Similarly, there is the term stop gained and conservative inframe deletion and insertion. Thank you!