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NCBI Datasets is a new resource that lets you easily gather data from across NCBI databases.
There is an issue with the graphical genomic tool of SARS-CoV-2 relative to nsp16. It should starts at nt 20659, but the graph shows nsp13 instead. nsp13 is correctly shown...
probably just a misnomer /tmp/ipykernel_48/688326240.py in 7 refseq_only=True, 8 exclude_sequence=False, ----> 9 _preload_content=False 10 ) 11 /srv/conda/envs/notebook/lib/python3.7/site-packages/ncbi/datasets/openapi/api/virus_api.py in virus_genome_download(self, taxon, **kwargs) 945 self.gene_download_summary_by_accession_endpoint.headers_map[key] = headers[key] 946 --> 947 return self.virus_genome_download_endpoint.call_with_http_info(**kwargs)...
Hi, I'm trying to download protein sequences of all Vertebrates using this command. Its running on Redhat 8.3. `./datasets download genome taxon Vertebrates --exclude-rna --exclude-seq --exclude-gff3 --exclude-genomic-cds --filename Vertebrates.zip` It...
Hello, Here are a few improvements that, in my opinion, could greatly simplify and improve downstream processing: 1) Is it possible to add "--latest-version" for `datasets genome` command? Right now,...
I'm experiencing disrupted downloads. Is there a resume option to resume downloading? My commandline: datasets download genome taxon 2 --filename taxon_2_bacteria.zip my goal is to download "all" bacteria, even those...
I would like to torrent the NCBI database to reduce bandwidth loading and improve speed. I'm novice in this topic and didn't know where to post this question. Thanks for...
So we can get datasets from a specific day. Otherwise it's tricky to write a deterministic test that doesn't increase in runtime while new datasets are being added.
_I emailed this question to nlm-support a couple of days earlier. Sorry for doubleposting, but I think this is a better way to ask my question_ feature/enhancement: verification/validation of downloaded...
Hello. After installing the python package "ncbi-datasets-pylib" I tried using one of the example codes. One of the lines in the code is from ncbi.datasets.openapi import GeneApi as DatasetsGeneApi, GenApi...
Hello, I've succesfully downloaded a dehydrated dataset of Campylobacter coli, althought, I'm getting this error during the rehydration process : ~/D$ ./datasets rehydrate --directory Campylo_coli/ Found 38905 files for rehydration...
