datasets
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ncbi
NCBI Datasets is a new resource that lets you easily gather data from across NCBI databases.
Hello, In my hands the published OpenAPI spec for Datasets (and also the latest version in git) fails validation. This appears to be caused by empty values for `example` `summary`...
When adding the `--debug` flag as in `datasets download virus genome taxon 186538 --no-progressbar --filename results/ncbi_dataset.zip --debug` the initial output (a log of HTTP requests and responses) is helpful -...
Sadly the issue is still active, at least for taxons ebola-zaire and mpox. See #356 ``` New version of client (16.16.0) available at https://ftp.ncbi.nlm.nih.gov/pub/datasets/command-line/LATEST/linux-arm64/datasets. Error: Internal error (invalid zip archive)....
**Versions** conda package: 16.15.0-ha770c72_2 ``` $ datasets --version datasets version: 16.15.0 ``` **Describe the bug** Any downloaded file has '600' permissions, but not the default of the user. Note that...
### Before opening an issue, please: - [x] Make sure you are using the latest version using `datasets --version` - [x] Review our [documentation](https://www.ncbi.nlm.nih.gov/datasets/docs/download-and-install/) **Describe the bug** Error when calling...
If one goes to the REST API documentation for this tool * https://www.ncbi.nlm.nih.gov/datasets/docs/v2/reference-docs/rest-api/ It contains a comprehensive list of links on how to use the REST API. Try the first...
