ApiTypeError

[Viromic]

probably just a misnomer /tmp/ipykernel_48/688326240.py in 7 refseq_only=True, 8 exclude_sequence=False, ----> 9 _preload_content=False 10 ) 11

/srv/conda/envs/notebook/lib/python3.7/site-packages/ncbi/datasets/openapi/api/virus_api.py in virus_genome_download(self, taxon, **kwargs) 945 self.gene_download_summary_by_accession_endpoint.headers_map[key] = headers[key] 946 --> 947 return self.virus_genome_download_endpoint.call_with_http_info(**kwargs) 948 949 def virus_genome_summary(

/srv/conda/envs/notebook/lib/python3.7/site-packages/ncbi/datasets/openapi/api_client.py in call_with_http_info(self, **kwargs) 816 ) 817 --> 818 self.__validate_inputs(kwargs) 819 820 params = self.__gather_params(kwargs)

/srv/conda/envs/notebook/lib/python3.7/site-packages/ncbi/datasets/openapi/api_client.py in __validate_inputs(self, kwargs) 716 False, 717 kwargs['_check_input_type'], --> 718 configuration=self.api_client.configuration 719 ) 720 kwargs[key] = fixed_val

/srv/conda/envs/notebook/lib/python3.7/site-packages/ncbi/datasets/openapi/model_utils.py in validate_and_convert_types(input_value, required_types_mixed, path_to_item, spec_property_naming, _check_type, configuration) 1575 key_type=False, 1576 must_convert=True, -> 1577 check_type=_check_type 1578 ) 1579 return converted_instance

/srv/conda/envs/notebook/lib/python3.7/site-packages/ncbi/datasets/openapi/model_utils.py in attempt_convert_item(input_value, valid_classes, path_to_item, configuration, spec_property_naming, key_type, must_convert, check_type) 1447 if configuration is None or not configuration.discard_unknown_keys: 1448 raise get_type_error(input_value, path_to_item, valid_classes, -> 1449 key_type=key_type) 1450 for valid_class in valid_classes_coercible: 1451 try:

ApiTypeError: Invalid type for variable 'taxon'. Required value type is str and passed type was int at ['taxon']

[ericcox1]

Hi Viromic,

Thanks for your feedback. This bug should be fixed in the latest version of the python package. Please try upgrading to the latest version of the python package:

pip install --upgrade ncbi-datasets-pylib

Best, Eric

Eric Cox, PhD [Contractor] (he/him/his) NCBI Datasets Sequence Enhancements, Tools and Delivery (SeqPlus) NIH/NLM/NCBI [email protected]

[khanfs]

Hi Eric,

I've tried upgrading but still get the error:

ApiTypeError: Invalid type for variable 'taxon'. Required value type is str and passed type was int at ['taxon']`