TPMCalculator

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Output files desctiption

2

Hello, I found some details about output in your article: "The TPMCalculator output is comprised of five files per sample reporting the TPM values and raw read counts for genes,...

PenguinNell

Build problems on Ubuntu and MacOSX

1

Following the README instructions for building TPMCalculator from source fails for a couple of reasons: 1: setting LDFLAGS="-L $BAMTOOLS_DIR/lib64 -Wl,-rpath,$BAMTOOLS_DIR/lib64" is not correct - the build process for bamtools does...

peterstockwell

Why don't the exon TPM values add up to ExonTPM?

3

Hi there, Thank you for creating this very useful tool! I don't understand why the sum of the individual exon TPM values in the genes.uni file don't add up to...

tspost

Hi! I am using TPM Calculator for the first time on 83 bam files composed of over 475 NCBI SRR datasets from different researchers and Illumina technologies. Ideally, read lengths...

000generic