Nathan Weeks

That makes sense---thanks for the historical context. I agree that improving the error message (and perhaps clarifying the `singularity build --help` output?) should help resolve any user confusion regarding the...

The approach described in the Rocker [Singularity](https://rocker-project.org/use/singularity.html) guide, which calls `rserver` directly, could be adapted to run RStudio Server on Kubernetes with a non-root user. Minimal example using a Pod...

> [@nathanweeks](https://github.com/nathanweeks) Is it not possible to have persistent volumes in the setup? When I try to mount /home with persistent volume, it doesnt go through. Using a PV for...

Might need to run the CI checks again---seems like there were some network and/or disk-full related errors for the self-hosted runners? e.g.: https://github.com/nf-core/modules/actions/runs/19082094294/job/55387492031#step:6:1057 ``` ERROR ~ Error executing process >...

I suspect that this change is triggering far more tests than normally run, resulting in disk space exhaustion on the runners. To test this hypothesis, in a fork of nf-core/modules...

Per nf-core slack, I temporarily increased max_shards from 15 to 30. Will revert after tests have run and before PR is merged.

Still running out of space with 30 shards. Bumping max_shards to 60 to see if that's sufficient...?

> Try merging the master branch into your branch, that should lower the number of tests again I think! @famosab Thanks for the tip! That substantially reduced the number of...

PR to attempt to fix the metaphlan3_metaphlan3 and metaphlan3_mergemetaphlantables errors: https://github.com/nf-core/modules/pull/9448

> PR to attempt to fix the metaphlan3_metaphlan3 and metaphlan3_mergemetaphlantables errors: #9448 This PR was merged, and the metaphlan3 errors should be resolved. > 16. [x64 | conda | 13](https://github.com/nf-core/modules/actions/runs/19535021929/job/55946779715)...