Nathan Weeks

This should be fixed by #211

I think this issue can be closed?

I can reproduce on a different Sapphire Rapids model. Setting the environment variable `OPENBLAS_CORETYPE=SKYLAKEX` (see the OpenBLAS [Usage guide](https://github.com/OpenMathLib/OpenBLAS/blob/develop/USAGE.md#how-to-choose-target-manually-at-runtime-when-compiled-with-dynamic_arch) and [TargetList.txt](https://github.com/OpenMathLib/OpenBLAS/blob/485027563ea3c5f609c75df186d403df4eaec318/TargetList.txt)) results in the first set of (I assume more-correct)...

FWIW this issue is reproducible on rocker/r-ver:4.2.2 (Ubuntu 22.04 / OpenBLAS 0.3.20 / gcc 11.4.0), but rocker/r-ver:4.2.1 (Ubuntu 20.04 / OpenBLAS 0.3.8 / gcc 9.4.0) is not affected.

rocker/r-ver:4.4.1 is affected by this issue, but rocker/o-ver:4.4.2 (Ubuntu 24.04 / OpenBLAS 0.3.26) is not.

@nickhir Were those environment variable settings added to the rsession.sh script (that also sets R_LIBS_USER)? https://github.com/rocker-org/website/blob/e99414de7974ba0cb70306a9146594ca0f2e9200/use/singularity.md?plain=1#L96-L101 It seems setting R_PROFILE_USER and R_ENVIRON_USER there have the intended effect (with the rstudio_4.2.sif...

@nickhir An example is included in this PR: https://github.com/rocker-org/website/pull/120

> Can I close this in favor of [rocker-org/website#120](https://github.com/rocker-org/website/pull/120)? @eitsupi: IMHO yes, but @nickhir might verify if possible. @drkrynstrng: the rsession process doesn't seem to inherit the environment variables of...

To document this idea somewhere... The GitHub-hosted runners have relatively little available space (18G on `ubuntu-latest`) on the root partition due to the size of the default runner image, but...

I haven't tested this approach with the AWS-hosted runners that nf-core/modules uses---do they have only one large root filesystem instead? (FWIW, I used [mxschmitt/action-tmate](https://github.com/mxschmitt/action-tmate) to interactively poke around a GitHub-hosted...