Nathan Weeks

@lgretton Thanks for the attempt! I agree that if the goal is to parse exonerate output, `--ryo` is the way to go. It would still be nice if the alignment...

`docker volume [create|inspect|ls|rm]`, at least for creating Azure file shares. Documentation / examples on how to use the existing `docker run --volume user:key@my_share:/absolute/path/to/target ...` would be nice. By trial &...

Ping if this PR might receive "approved, lgtm labels".

For the most part yes, though I've encountered at least a couple limitations: 1. No linux/arm64/v8 builds, which can present problems with (at least) local development/use on macOS 2. (Minor...

Hi Josh, I verified this issue occurs with the SoyBase GBrowse: http://soybase.org/gb2/gbrowse/gmax2.0/?ref=Gm02;start=15260611;stop=15264625 http://soybase.org/gb2/gbrowse/gmax2.0/?ref=Gm01;start=14479585;stop=14483603 When the URLs were opened in that order, both browser tabs had the second URL. We're using...

@laurie-tonon This looks like the error that was resolved in https://github.com/rocker-org/website/pull/92, which I now noticed updated only the "Running a Rocker Singularity container with password authentication" section, though the `rserver...

An update to the Rocker Singularity guide that includes (among other various updates) `rserver --server-user` in the job script has been proposed: https://github.com/rocker-org/website/pull/120 Comments or suggested changes would be appreciated.

For SingularityCE (or Apptainer), the following seems sufficient to launch shiny server (accessible from http://localhost:3838 ; the `sed` command can be extended to modify the port specified in shiny-server.conf if...

Is python2 required, or could python3-setuptools be substituted? I tried the following patch against the "master" branch (just hard-coding UBUNTU_CODENAME for testing purposes): ``` --- a/scripts/install_rstudio.sh +++ b/scripts/install_rstudio.sh @@ -37,7...

Yes, though I was hoping to use this image as-is without having to build a custom image from Dockerfile/Containerfile & maintain it in another container registry. Also, for Perl apps...