katuali

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Dear nanoporetech team, thank you very much for an inspiring tool which seems to work fine. Not sure if this is an issue or rather feature request: What is the...

joergFLI

I installed a CPU-only version of guppy, `ont_guppy_cpu_5.0.7-1_xenial_amd64.deb`, for the katuali pipeline. When I run `katuali --configfile my_config.yaml all_fast_assm_polish`, I see that `rule basecall_guppy:` is still `resources: gpu=1`. I get...

jjmmii

what is porpita?

1

How to install porpita in rule porpita？I did not find relevant information。

xiaoguang-sjtu

Issue with combining fastq files

1

Hello, so from what I can tell I have all of the preinstallation done correctly, but when I run `sudo make test` It ends up failing in the guppy step,...

kazar4

error at test after installation of required dependencies

4

I have installed katuali as per [instructions](https://nanoporetech.github.io/katuali/installation.html) and I now trying to get the pipeline running. I have installed the required dependencies (except for `guppy`, which was installed via the...

BCArg

make test problem with python

2

Hi there! I recently installed katulai and tried running 'make test'. After 'make test', I got this error: (omit info of installation of many packages...) Using /share/apps/miniconda3/lib/python3.8/site-packages/wcwidth-0.2.5-py3.8.egg Searching for smmap==3.0.5...

zmz1988

Make test issue

2

Hi, I am a newby and I was trying to install katuali following the instruction. I think I got it right until the setup of the environment. I was then...

valentinavan

Problem with installing Katuali

14

Hi, I tried to install Katuali program in ubuntu (https://releases.ubuntu.com/16.04/?_ga=2.229415391.231427745.1601872308-250255130.1599689398). After running the following commands, I still get the following Error 1 message when I try to “make install”. Please...

Sham397243

make test problem

4

Hey! I've installed the Katuali pipeline and installed the requiered packages as well, mostly with conda. I needed to install pomoxis into a virtual env. becouse the server has python...

Noah603

venv/usr/local/bin instead of venv/bin ?

2

I'm trying to install using the instructions here, and I see an error when activate is called: git clone [etc] cd katuali make install `test -d venv || virtualenv venv...

morien