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guppy still checking gpustat when CPU-only guppy is installed

Open jjmmii opened this issue 3 years ago • 0 comments

I installed a CPU-only version of guppy, ont_guppy_cpu_5.0.7-1_xenial_amd64.deb, for the katuali pipeline. When I run katuali --configfile my_config.yaml all_fast_assm_polish, I see that rule basecall_guppy: is still resources: gpu=1. I get error Error on querying NVIDIA devices. Use --debug flag for details, at the following step: gpustat >> run1/guppy.log. I think if I set configure rule basecall_guppy to resources: gpu=0 then it would skip the gpustat step, but where do I configure this? There is no hint in the config.yaml that comes with katuali. Thank you.

jjmmii avatar Jun 02 '21 04:06 jjmmii