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guppy still checking gpustat when CPU-only guppy is installed
I installed a CPU-only version of guppy, ont_guppy_cpu_5.0.7-1_xenial_amd64.deb
, for the katuali pipeline. When I run katuali --configfile my_config.yaml all_fast_assm_polish
, I see that rule basecall_guppy:
is still resources: gpu=1
. I get error Error on querying NVIDIA devices. Use --debug flag for details
, at the following step: gpustat >> run1/guppy.log
. I think if I set configure rule basecall_guppy
to resources: gpu=0
then it would skip the gpustat
step, but where do I configure this? There is no hint in the config.yaml
that comes with katuali. Thank you.