Marius van den Beek

Cannot switch to purged history / history actions not available

1

I want to extract a workflow from a purged history. This used to be possible, but it's not now since I can't switch to that history. Generally speaking I should...

[24.0] Fix activity bar touch events on iOS devices

1

I'm not sure what the issue is here, the minimal fix is this: ```diff diff --git a/client/src/components/Popper/usePopper.ts b/client/src/components/Popper/usePopper.ts index ad18847d8d..183d2e49be 100644 --- a/client/src/components/Popper/usePopper.ts +++ b/client/src/components/Popper/usePopper.ts @@ -190,7 +190,7 @@ export...

Drop "Send to cloud" tool and associated cloudauthz code

1

Opening this to make sure I'm not missing a reason why would need to keep any of this around: https://github.com/galaxyproject/galaxy/blob/release_24.0/tools/data_export/send.xml and associated authz plumbing should probably be removed. I don't...

Hi there, We're running codespell (https://github.com/codespell-project/codespell) on Galaaxy's public facing API docs, and it complains about implementors. I saw you've changed one instance of implementors in https://github.com/ga4gh/data-repository-service-schemas/commit/ec561279ba9118e97e407170b0e51efc09ae1ae3 already, so I...

This seems significantly more stable in my hands, if a kernel dies I can actually reconnect. I wouldn't merge this as is, we might perhaps mirror the different notebooks in...

Drop lint from preventing deployment

14

and we should really take a good look at the signal we're sending by applying linting rules to PRs for things that are already broken. It does increase the barrier...

Fixes: ``` Exception caught while attempting to execute tool with id 'toolshed.g2.bx.psu.edu/repos/iuc/hisat2/hisat2/2.2.1+galaxy1': AttributeError: 'HistoryDatasetAssociation' object has no attribute 'forward' File "galaxy/tools/__init__.py", line 1968, in handle_single_execution rval = self.execute( File "galaxy/tools/__init__.py",...

crossmap_vcf has python3-compatible profile version, but uses python2 features

1

https://github.com/galaxyproject/tools-iuc/blob/main/tools/crossmap/crossmap_vcf.xml#L19 ... you can't do that: ``` In [1]: filter(None, [1])[0] --------------------------------------------------------------------------- TypeError Traceback (most recent call last) in ----> 1 filter(None, [1])[0] TypeError: 'filter' object is not subscriptable ```...

Fixes an issue reported by @abueg, where inputs in the workflow run form appear to be correctly filtered by the tag value, but upon submission the unfiltered default value is...