Marius van den Beek

Results 192 issues of Marius van den Beek

I guess this could be debated ? What's your take on this @natefoo ? This is happening on the VGP instance in https://sentry.galaxyproject.org/share/issue/8860299efa3b49a2a620489692db039f/ ... maybe we should instead either enable...

area/tool-framework

`params_from_strings` is called from within the compute environment, where we generate the command line, which is after we've persisted job parameters: https://github.com/galaxyproject/galaxy/blob/5addd0093380118954d73ead601cc5ecc0e8b154/lib/galaxy/tools/evaluation.py#L137 This is too late to decide to skip...

kind/bug
area/tool-framework

``` TypeError: 'NoneType' object does not support item assignment File "galaxy/jobs/runners/__init__.py", line 297, in prepare_job job_wrapper.prepare() File "galaxy/jobs/__init__.py", line 1249, in prepare tool_evaluator.set_compute_environment(compute_environment, get_special=get_special) File "galaxy/tools/evaluation.py", line 171, in set_compute_environment...

kind/bug
area/workflows

(if possible ... this isn't going to work for uploads from archives) Small enhancement that lets us consume collection uploads immediately. We're not using this way of uploading on the...

kind/enhancement
area/API
area/upload

![image](https://github.com/galaxyproject/galaxy/assets/6804901/5d490641-7acc-4273-9618-96138991fbe7) is a bit confusing

kind/bug
area/UI-UX
area/workflows

Builds on #17578 but avoids global manipulation of requests. Should eventually also fix https://github.com/galaxyproject/galaxy/issues/17995 ## How to test the changes? (Select all options that apply) - [ ] I've included...

area/testing
area/API
area/jobs
area/workflows
area/database
area/scripts
area/tool-framework
area/util
area/tool-dependencies
area/testing/api
area/testing/integration
area/testing/selenium
area/auth

These are kind of important ...

kind/bug
area/workflows

From https://sentry.galaxyproject.org/share/issue/e953d31f25d64b31a8333fc3398a4698/: ``` reason= workflow_step_id=7073867 details=None ``` I checked, and in this particular case there's a when expression on the step but no input connection. Interestingly, the workflow editor also...

kind/bug
area/UI-UX
area/workflows
area/backend

@jmchilton added some nice tooltips in #12912, and I think we should/could take this a bit further and describe a few basic unix concepts/terms in more detail (especially since they...

area/UI-UX
feature-request
paper-cut

We have these cool embeddable read-only workflow previews, would be neat if these could be embedded in reports: Would also side-step the issue that svg generation has some issues currently.

area/UI-UX
feature-request
area/workflows