Michael Schubert

Results 131 comments of Michael Schubert

I can confirm that the pypi tarball does _not_ include the assets; I'm open to suggestions what a good solution is here.

I can definitely raise that, but given that they have 1.1k open issues it might take a while. How strict is the "no internet" rule for `sci`, do we have...

@Nowa-Ammerlaan as far as I have seen, the new version now includes the "Assets" on PyPI

Hm, I need a way to reliably test this myself and not bother you with all the time time :laughing: (I can't disconnect the network on my prefix)

Great, thanks! But this either does not work on prefix, or I can't reproduce the fetch. I'm also confused because snakemake [should not fetch the assets](https://github.com/snakemake/snakemake/blob/main/src/snakemake/assets/__init__.py#L555-L557) that are already in...

I can confirm that `FEATURES=network-sandbox` does not work on prefix. I'll see if I can set up a VM to properly test this.

I now added a patch to fix the asset download; this works on my VM

This is currently not supported, and we need you to request enough resources from the scheduler to complete your computations. Do you have a use case for when such functionality...

Ok, I see. It seems you have the following options: 1. Request more time overall. This is the usual strategy when requesting HPC resources: be sure to request enough time...

I've just debugged the container at `quay.io/biocontainers/hla-la:1.0.4--h077b44d_1` for a while, so maybe the below helps to get it running for you: ```sh wget http://www.well.ox.ac.uk/downloads/PRG_MHC_GRCh38_withIMGT.tar.gz tar -xf PRG_MHC_GRCh38_withIMGT.tar.gz HLA-LA.pl --prepareGraph 1...