Michael Schubert

I can confirm for `gffutils=0.13`, `python=3.12` on Gentoo

Related to that, (also parallel) chunks are currently finished even if they encounter an error; may be worth reconsidering

This works on my system. If I run `Q` with `log_worker=T`, I get the following error in the console (and no additional log error): > Error: 1/1 jobs failed (0...

How long does loading the package in an interactive job take? In any case, we're just executing the R function code, so I don't think `clustermq` can do anything to...

I've investigated a bit and I can confirm that calling `SCTransform` on the `pbmc` dataset hangs with `clustermq`, both with the `slurm` scheduler as well as `local`. I have not...

I've added the comment on the linked `Seurat` issue. I'm closing this here, please reopen if you think there is anything we should change from the `clustermq` side.

This may also happen with formulas, e.g. `design(DESeqDataSet)` will include the whole environment in the serialized object if `design` is set within a function

I stumbled over this yesterday too: The reason was that it wasn't obvious to me that the ranges need to have protein ID names. The names are set in the...

> do you mean the help page of the `proteinToGenome()` function? Yes, exactly. I see you already added that, great, thank you!

Yes, that's what [`clustermq` currently does](https://github.com/mschubert/clustermq/blob/master/R/worker.r#L65). However, please note that I'm transitioning to a system where the [master environment gets updated on the workers automatically](https://github.com/mschubert/clustermq/blob/develop/src/CMQMaster.h#L68-L73).