Sudarshan
The `aggregate_*` methods, when dealing with missing taxonomic information return the entire row where there is information combined as shown below. ``` library(jeevanuDB) library(microbiome) data("emp_human") ps0
Recently, there is an increase in temporal microbiota studies. Addressing relevant analysis such as community turnover, taxa- gain and loss (user defined thresholds for detection), stability of taxa in terms...
Correct 16S to 16S rRNA gene if any in tutorials
Develop a standard template to report issues with minimal information required to better address the user queries.
@antagomir the plot_composition function has changed and the arguments in tutorial no longer exists. I would prefer the previous function with options for taxonomic.level, transform in this function as colleagues...
Dear Developers, When comparing the species-pathway tables and metaphlan species-abundance tables, I get different names. Apart from differences like CAG_XXX being CAG:XXX, [Lactobacillus](https://bccm.belspo.be/news/re-classification-lactobacillus-genus-25-genera) naming is different. Below is the complete...
Request for function that allows comparison of beta diversity (boxplots) between and within groups.
BTW @antagomir I was wondering what would be the best way to maintain this website resource. This could also be linked to the suggestions from @TuomasBorman https://github.com/microbiome/OMA/issues/352#issue-1926094073
 Just to get a more visual and aesthetic overview for our project :) I can update this as and when we have new packages and ideas.
UniFrac
Currently the UniFrac distance calculation is ported from phyloseq to work with TreeSummarizedExperiment objects. I recently came across this issue in phyloseq github https://github.com/joey711/phyloseq/issues/956 It seems that there are some...