Sudarshan

Yes this would be good. Not yet sure how to do this but the idea here can be using the taxonomic classification like phylum-class-order-family-genus-species-otuid. Or simply the best taxonomic classification...

I have the data at this location which is also used by [microbiomeutilities R package.](https://github.com/microsud/microbiomedatarepo/tree/master/datasets/Baxter_FITs_Microbiome_2016). Will this be okay? Cheers, Sudarshan

@antagomir I can understand what you mean here. Assuming that the `transform` and `aggregate_taxa` are core functions these will not be changing i would prefer to have the older functionality....

The current function is okay as it is. We need not play around with this. The complex aruguments have been maintained in `plot_taxa_composition` function in `microbiomeutilities` R package already.

Some analysis is suggested/implemented for macroecological data References: [Hannah L. Buckley, Nicola J. Day, Bradley S. Case, Gavin Lear, Aaron M. Ellison. Multivariate methods for testing hypotheses of temporal community...

hi @Debora6991 Thanks for raising the query. The tutorials you are working with are from 2017 and not updated. Parts of it are moved to the main package tutorials at...

Hi can you share a reproducible example? Do you have the same version of microbiome pkg on Mac and Linux?

#113 also had this issue addressed and latest microbiome pkg version should work well.

Hi, Yes indeed! This is an issue with phyloseq and vegan. The solution here is to uninstall vegan package and re install version 2.4.5. Let us know if this solution...

I have created a [microbiomedatarepo](https://github.com/microsud/microbiomedatarepo) which can be accessed via the `microbiomeutilties` R package function [`get_microbiome_data`](https://microsud.github.io/microbiomeutilities/reference/get_microbiome_data.html). This datarepo contains a subset of studies included in the `MicrobiomeHD` database from [Duvallet...