InnerEye-DeepLearning
InnerEye-DeepLearning copied to clipboard
microsoft
Medical Imaging Deep Learning library to train and deploy 3D segmentation models on Azure Machine Learning
**🚀 Feature** Update packages and/or InnerEye code, so as not to have lightning deprecation warnings. **Motivation** When running the InnerEye code (commit [b42043f](https://github.com/microsoft/InnerEye-DeepLearning/tree/b42043f31aed9844eac4b1aa34a378c6d31e6767)), the following deprecation warnings are issued: ```...
work in progress: adding functionality to train a model to predict the dice score for each image the model segments. This can be used to identify failure cases where the...
### Is there an existing issue for this? - [X] I have searched the existing issues ### Bug summary When importing any components from `InnerEye/Azure/azure_util.py` a ModuleNotFoundError is raised if...
### Is there an existing issue for this? - [X] I have searched the existing issues ### Bug summary We are using very old reference runs in the model comparison...
### Is there an existing issue for this? - [X] I have searched the existing issues ### Issue summary The documentation in Markdown does not say a lot how to...
Hello In [HeadAndNeckBase.py](https://github.com/microsoft/InnerEye-DeepLearning/blob/main/InnerEye/ML/configs/segmentation/HeadAndNeckBase.py) the following is stated in a comment: "with the appropriate dataset, this would build the model whose results are reported in the InnerEye team’s paper". I assume...
[AB#3935](https://innereye.visualstudio.com/60ce1777-00d6-4015-82bc-488a0c00202f/_workitems/edit/3935)
From https://github.com/readthedocs/recommonmark: > **Warning:** recommonmark is now deprecated. We recommend using [MyST](https://github.com/executablebooks/MyST-Parser) for a docutils bridge going forward. See [this issue](https://github.com/readthedocs/recommonmark/issues/221) for background and discussion. [AB#5336](https://innereye.visualstudio.com/60ce1777-00d6-4015-82bc-488a0c00202f/_workitems/edit/5336)
Assuming #660 has been fixed: ```shell $ make html python preprocess.py Running Sphinx v3.1.1 making output directory... done WARNING: html_static_path entry '_static' does not exist building [mo]: targets for 0...
Starting training of a new models, but use existing model to initialise weights: How can this be done? [AB#4217](https://innereye.visualstudio.com/60ce1777-00d6-4015-82bc-488a0c00202f/_workitems/edit/4217)