Fernando Pérez-García

Awesome list of software that I use to do research in medical imaging.

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Medical imaging toolkit for deep learning

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"pip install unet": PyTorch Implementation of 1D, 2D and 3D U-Net architecture.

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PyTorch implementation of HighRes3DNet

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This extension contains only a module with some tools to install PyTorch inside Slicer, using the best possible version.

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3D Slicer module for TorchIO.

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Python implementation of the STAPLE segmentation algorithm

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Brain vessel segmentation using 3D convolutional neural networks

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3D Slicer modules for brain segmentation using deep learning.

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