adVNTR

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Hi, I tried to build database for my VNTRs, the following error occurred: Traceback (most recent call last): File "/rd1/laixh/soft/anaconda2/envs/snakemake/bin/advntr", line 33, in sys.exit(load_entry_point('advntr==1.5.0', 'console_scripts', 'advntr')()) File "/rd1/laixh/soft/anaconda2/envs/snakemake/lib/python3.10/site-packages/advntr-1.5.0-py3.10-linux-x86_64.egg/advntr/__main__.py", line 149,...

BrendaLee1

Error with genotype

2

Hi, I've been trying to follow the quickstart guide to test adVNTR using the sample data provided. However, the following error keeps occuring Using Theano backend. WARNING (theano.tensor.blas): Using NumPy...

R-Laksh

Error running advntr --help

11

Hi, I was trying to setup advntr using conda and running into to this error. Any help is appreciated. Thank you > (/home/aravind/advntrenv) aravind@cn61:~$ advntr --help > Traceback (most recent...

aravindpad

@mehrdadbakhtiari **Issue:** *I get an `IndexError` when I try to run `advntr addmodel`. What can be done to fix this error?* **Version:** adVNTR 1.3.3 (downloaded using conda) (Note: I have...

jsquaredosquared

why is `python >= 3.7` skipped in [meta.yaml](https://github.com/bioconda/bioconda-recipes/blob/d0879b8111b6ccdb343fb027bddca6a064febe67/recipes/advntr/meta.yaml#L8) during build?

yangxingyu588

Genotype Error

5

Hi! The following error always occur when I run genotype command on pacbio bam file: Traceback (most recent call last): File "/soft/Anaconda/anaconda3/bin/advntr", line 11, in sys.exit(main()) File "/soft/Anaconda/anaconda3/lib/python3.6/site-packages/advntr/__main__.py", line 134,...

BrendaLee1

only None copy numbers in the output file

5

I tried adVNTR on PacBio data and the output bed file has only None values in R1 and R2 columns. It basically does not genotype any tandem repeat region.

maryamghr

Hello, I have bam file of pacbio hg38 here, which db file should I use?

Xiaodiao1111

If this software can be used in nonhuman data? How can we extend it to other species?

FarmOmics

# Description adVNTR has some warning messages related to Keras. Currently, the default output is set to standard output, and so the warning messages break the output format.

Jong-hun-Park