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Error running advntr --help

Open aravindpad opened this issue 5 months ago • 11 comments

Hi, I was trying to setup advntr using conda and running into to this error. Any help is appreciated. Thank you

(/home/aravind/advntrenv) aravind@cn61:~$ advntr --help Traceback (most recent call last): File "/home/aravind/advntrenv/bin/advntr", line 7, in from advntr.main import main File "/home/aravind/advntrenv/lib/python2.7/site-packages/advntr/main.py", line 6, in from advntr.advntr_commands import genotype, view_model, add_model, del_model File "/home/aravind/advntrenv/lib/python2.7/site-packages/advntr/advntr_commands.py", line 7, in from advntr.genome_analyzer import GenomeAnalyzer File "/home/aravind/advntrenv/lib/python2.7/site-packages/advntr/genome_analyzer.py", line 8, in from advntr.vntr_finder import VNTRFinder File "/home/aravind/advntrenv/lib/python2.7/site-packages/advntr/vntr_finder.py", line 14, in from advntr.hmm_utils import * File "/home/aravind/advntrenv/lib/python2.7/site-packages/advntr/hmm_utils.py", line 3, in from pomegranate import DiscreteDistribution, State File "/home/aravind/advntrenv/lib/python2.7/site-packages/pomegranate/init.py", line 38, in from .hmm import * File "pomegranate/hmm.pyx", line 13, in init pomegranate.hmm File "/home/aravind/advntrenv/lib/python2.7/site-packages/networkx/init.py", line 68, in import networkx.utils File "/home/aravind/advntrenv/lib/python2.7/site-packages/networkx/utils/init.py", line 2, in from networkx.utils.decorators import * File "/home/aravind/advntrenv/lib/python2.7/site-packages/networkx/utils/decorators.py", line 7, in from decorator import decorator File "/home/aravind/advntrenv/lib/python2.7/site-packages/decorator.py", line 162 print('Error in generated code:', file=sys.stderr) ^ SyntaxError: invalid syntax

aravindpad avatar Jan 10 '24 16:01 aravindpad