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verified publisher icon nf-core

Migrate CI tests to Pytest workflow

Open edmundmiller opened this issue 3 years ago • 4 comments

Follow up to #546

edmundmiller avatar Oct 10 '22 09:10 edmundmiller

nf-core lint overall result: Passed :white_check_mark: :warning:

Posted for pipeline commit 05df41c

+| ✅ 153 tests passed       |+
#| ❔   4 tests were ignored |#
!| ❗   1 tests had warnings |!

:heavy_exclamation_mark: Test warnings:

  • pipeline_todos - TODO string in methods_description_template.yml: #Update the HTML below to your prefered methods description, e.g. add publication citation for this pipeline

:grey_question: Tests ignored:

:white_check_mark: Tests passed:

Run details

  • nf-core/tools version 2.6
  • Run at 2022-11-10 15:05:44

github-actions[bot] avatar Oct 10 '22 09:10 github-actions[bot]

I think we're going to need adjust the tags for the star and salmon tests, there's a bunch of overlap as of right now.

edmundmiller avatar Oct 12 '22 10:10 edmundmiller

I love it, it's amazing, but only issue would be the modules.config. Idea would be to be more granular and split our modules.config.

maxulysse avatar Oct 12 '22 13:10 maxulysse

I vote we wait for a nf-core pipeline create-test-yml that takes the flags you want to pass and they generates the md5sums!

I think that's the way we bring this to the masses.

edmundmiller avatar Oct 16 '22 13:10 edmundmiller