Maximilian Haeussler

I really also want a lasso, but unfortunately there are so many things to do, notably importaing more file formats (SingleCellExperiment), fixing the worst bugs with quick genes, improving the...

Hi, thanks for this feedback. You can supply multiple matrices like this: matrices=[ {'label':'counts','fileName':'counts_exprMatrix.tsv.gz'}, {'label':'data','fileName':'data_exprMatrix.tsv.gz'}, {'label':'scale','fileName':'scale_exprMatrix.tsv.gz'}] But this will be used for downloads only. Right now these are not used...

Hi @devashishmohanta are you still interested in this feature? On Fri, May 27, 2022 at 12:55 AM Matt Speir ***@***.***> wrote: > Hi, @devashishmohanta . > > Sorry for the...

I may be wrong, but isn't expression + ADT in the same matrix for a cite-seq experiment? If so, we should be able to handle this without any changes, I...

Yes just make them unique. Add a prefix or suffix. Hmm… we’ll need some way in the UI to make this obvious … any idea ? On Wed 15 Jun...

f we are working under conda environment, the line /usr/local/bin in the crispraddgenome should be changed to /path/to/conda/environment/bin (in my case: /scratch/jubina/miniconda/envs/sgRNA/bin) otherwise, even if we copy all files and...

Hi Lukas, slowness: can you tell me a little how exactly you're running it? How much RAM does your machine have? How big is your input file? The error: hm,...

Also, depending on what you're doing flashfry may be the better tool for your application. If you're scoring many many guides, it was designed for that.

It may take a bit until I've fixed this, especially with the effect of holidays. Can you run crispor for now without the ramdisk speedup? Wouldn't that be fast enough...

Even if takes a few second for every guide, your BED file should still be processed after a night or so, so I guess, it's easiest for you, for now,...