Maximilian Haeussler

Hi @shiqi-yang, can you have a look at this previously answered mailing list question and see if the solution works for you? https://groups.google.com/a/soe.ucsc.edu/g/genome/c/mIT6fe9l99g In short, the code needs the mariadb...

Hi @sanchit-saini, wow, this is interesting. We had no idea that you're calling our C functions from R directly, here, for the bigWig data import: https://github.com/lawremi/rtracklayer/blob/master/R/bigWig.R#L240 (the only thing that...

The only change was -struct bbiFile *bigWigFileOpenAlias(char *fileName, struct hash *aliasHash); -/* Open up big wig file. Free this up with bbiFileClose. Use aliasHash if non-NULL */ +struct bbiFile *bigWigFileOpenAlias(char...

@braneyboo I think we've had this issue before, that whenever we change something in bigBed/bigWig, rtracklayer runs into trouble. I wonder if we can think about a system to reduce...

Thanks! Yes, this confirms that this is your call: struct bbiFile * file = bigWigFileOpen((char *)CHAR(asChar(r_filename))); And we didn't change bigWigFileOpen. We made a single change 4-5 years ago to...

Hi @andrewwbutler, for cells.ucsc.edu, we're typically getting Seurat .rds files from labs. As these are not very future-proof (see e.g. this PR, Seurat has a habit of changing function and...

Hi @mojaveazure, you had criticized (rightfully) my weird way of supporting Seurat2 in the original code review, but at the time, due to my ignorance, I didn't see an alternative....

Also, @mojaveazure, is there a way to run automated tests on this? I remember you mentioned this before, but I have no idea how to set it up. Can I...

Hi, thanks! Do you remember where you announced the change? I guess I should simply subscribe to some email or newsfeed. For for my lack of knowledge about the release...

@mojaveazure just pinging this again, there is no rush, I just stumbled over it again.