Maximilian Haeussler

Actually, I was wrong, the screenshot I sent you shows that this is not a problem of NCBI vs. UCSC mapping but rather a difference between UCSC genes and RefSeq...

I don't think the fact that this location was later patched is relevant here, we're looking at the un-patched genome sequence. I think it's enough to say that it's a...

Hi @mdehoon , can you tell us why you think that? A leaf has a size, an index doesn't have a size. Also, the bigBed format was published almost two...

I think you're right, I just struggle why this has never lead to problems with billions of requests over this time on our website... I'll run it by more senior...

It looks like this will be backwards compatible, and I still do want to ask others here, but to me, it looks very likely that we'll make this change. This...

This is a version problem. I guess you’re using Python 3.x and Sklearn some version… ? You’ll need the same version that I tested or patch your way forwards …...

Crispor is moving to Python3, but i'm short on time this summer, so it's all a huge mess. The biggest problem is that I didn't know that some of these...

For the first error: can you manually run /opt/homebrew/Caskroom/miniconda/base/envs/crispor/bin/python2 and try to import matplotlib or pandas or twobitreader? If any of the requirements mentioned doesn't load, that will trigger this...

Sorry was out of office. Yes, getting software to work on other people's machines is hard. Would you prefer a docker image? > Those are in fact the versions that...

> In the end this was fixed by downgrading lightgbm from version 4.0.0 to 3.3.3 Oh, this is great to know!! Thanks!! > Message ID: ***@***.***> >