Matt Cieslak

What about if you set --nthreads 1

The cut-off top of the brain should probably go into a new issue if you're sure it's not an issue with the FOV of the original data. Closing this issue...

I think we got this info in the new recon docs at qsirecon.readthedocs.io

oh wow, this is new. Should be an easy fix, luckily

in the meantime you can set `--omp-nthreads 1`

synthseg needs a smarter bounding box workflow like the one already being used by synthstrip. It doesn't fit on an 8gb gpu without some cropping

Or maybe it would be better to have a `--gpu [require|try|none]` where `require` mode the will raise an error if the gpu version fails, `try` will try to use the...

Thanks for reporting @jhauneuro. How do you typically convert your data from dicom? Are you not using dcm2niix?

I'm thinking this file will go into the DWI Derivatives - is there an official spec for that?

@tsalo This must have been a side effect of the templateflow PR. Also a good point that we don't have any infant tests. @chiuhoward I'm not sure your binding strategy...