Matt Cieslak

could you try pennbbl/qsiprep:unstable?

I tried adding a `-config BZeroThreshold ` to the `dwibiascorrect` commandline, but this appears to not have been propagated into the commands run by `dwibiascorrect`. You can create a mrtrix...

Either way, qsiprep has a very old bids-validator installed and is need of an update.

This all looks good, except for `--level`, which isn't possible for qsiprep for now. The reason is that eddy and many of its advanced features can't be split up into...

Could you try this in 0.21.1? It should be fixed there

I've been thinking about this one - there isn't a ton of overlap between the two workflows, but there definitely is some. I have a hunch that almost all of...

Closing due to inactivity

Did this ever work?

Then the issue is solved!

I'm on board - would you recommend forking qsiprep to start? Or starting with a fresh repo and copying as needed?