Martin Rippin
Martin Rippin
I don't get these tests to work. I can't make any sense of the `pytest` output. Any hints or advice would be highly appreciated.
@nf-core/modules-team
Hey @jfy133 ! Thanks for your reply. I checked testing it locally and it fails as well, looking into the logs, I see that indeed the conda environment did not...
> Is that after installing in an isolated environment `conda create -n pretextmap -c bioconda pretext=1. samtools=`? yes
@priyanka-surana I made the requested changes. Could you please check again? Thank you.
Does this one help: `docker pull quay.io/biocontainers/cnvkit:0.9.9--pyhdfd78af_0`?
I also struggle with this. I set all proxy variables (`http_proxy`, `HTTP_PROXY`, `https_proxy`, `HTTPS_PROXY`, `no_proxy`, `NO_PROXY`) for the flux deployments, trying your guys solutions but nothing seems to solve the...
I did some detective work 🔎 and found that the sequences from https://rest.pubmlst.org/db/pubmlst_ecoli_achtman_seqdef/loci/fumC/alleles_fasta were missing. Maybe because this file is a bit "bigger" (921 KB, the biggest file of the...
I came back to this issue after some time and digged a bit deeper. It seems that in order to get singularity in docker running, docker needs to get started...
Hey, actually no, I did some research and it seems like it's not possible to run singularity inside docker as part of a github action. At least not for now....