Martin Rippin
Martin Rippin
That looks very promising, I will try to use that as well! Cheers!
It works! It's awesome, I simply run my `snakemake` command with the appropriate flags and it pulls the images and runs the workflow on my test data set. I am...
hey, I also tried the gitpod devcontainer for the raredisease pipeline and had some weird issues with running docker - the docker daemon was not running upon container start and...
adding the gitpod user to the docker group seems to fix the permissions issue when using docker: `usermod -aG docker gitpod`. Starting the docker daemon could be done in a...
This is only the first draft of the `main.nf` so far. I have to add a proper stubbing part to add a number of possible use cases. Also tests and...
> These look like very seperate use-cases and I would say it would make sense to make individual submodules for each one. When I started working on this at the...
> You have ~40 input channels, I just don't see how that is going to be usable or maintainable I agree, it is difficult. But then we need to discuss...
> > > You have ~40 input channels, I just don't see how that is going to be usable or maintainable > > > > > > I agree, it...
Yes, I am currently working on it. Sorry for the delay.
Finally the reduced version for germline: https://github.com/nf-core/modules/pull/8823