marchoeppner

For those with this particular issue, you can clone the repo and then: cd vt git checkout 0.577 make I.e. you go back to the previous "working" release 0.577 and...

Tested it with slurm 16.05.5 and am getting an error: Test mode: Abort due to Test Mode! Branch aFile would execute: touch aFile.test_module using Slurm Job [Command Id: null ]...

Maybe to clarify - the Bpipe test mode shows that the optional parameter "--qos=ikmb_a" is seen by the tool, but the slurm submit script does not include this option. Somewhere...

Hi, so I redid the whole thing and arrived add an compilation error: git clone https://github.com/ssadedin/bpipe.git devel git fetch git checkout -b custom_submit_opts origin/custom_submit_opts Branch custom_submit_opts set up to track...

Hi, seems to work now, thanks.

Hi, anything else that needs testing here? Or will this be merged into master now? /M

Thanks. I think the discussion you pointed out is missing some details. While it is true that specifying full paths can avoid confusion with respect to software versions etc, this...

Hi, just to maybe "close" this - I would second your interpretation that this is a limitation of your CEPH storage system. CEPH is not strictly a high-performance, highly parallel...

Second this request. Illumina seems to have their own custom module for this as they provide Dragen fastQC metrics in their MultiQC reports on basespace. Example file for the fastqc...