marchoeppner

Apologies for the late reply. This is the bintest file around the locus in question: ``` chr1 113391229 113391349 MAGI3 95.375 0.625269 0.979203 0.00205135 chr1 121324454 121324669 SRGAP2C 286.972 0.427088...

Certainly. Just randomly picking out one example where the list of GO terms seems excessively long. This the "decorated" mRNA for the locus shown below: ptg000007l EVM mRNA 20166438 20178559...

Thanks for the quick feedback, Yes, it would certainly be desirable to filter down the list of terms to the relevant ones (as the rest of the graph is implicitly...

Reopening this as there has been no movement so far.

Hi, seems like you are looking for the documentation of output formats: https://github.com/eggnogdb/eggnog-mapper/wiki/eggNOG-mapper-v2.1.5-to-v2.1.8#user-content-Output_fields

HI, just bumping this. Deepvariant is now up to v 0.9.0 - with apparently significant improvements all around. So would be nice to see that included. Thanks!

No worries, middle of March sounds fine.

Just a friendly bumb :)

Feeling bad to bump this again, but it's been another 2.5 months and DeepVariant is now up to version 0.10.0.

Hi, thanks for looking into it. No, I have no specific deadline - for the moment, I am converting our CRAMs to BAM and then run v1.0 of the pipeline....