sssom-py
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mapping-commons
Python toolkit for SSSOM mapping format
See @cthoyt comment [here](https://github.com/mapping-commons/sssom-py/pull/128#issue-723261390).
These docs are massively outdated: https://mapping-commons.github.io/sssom-py/installation.html We need to have a concise guide on how to get set up for new developers. maybe @joeflack4 after you figured it out, you...
## Description Due to use of relative imports, e.g. `from .cli` instead of absolute imports, e.g. `from sssom.cli`, I'm getting the error: > `ImportError: attempted relative import with no known...
## Overview There are some [ICD10CM::SNOMED mappings maintained by UMLS](https://www.nlm.nih.gov/research/umls/mapping_projects/snomedct_to_icd10cm.html). We want to essentially get these into SSSOM. ## Sub-tasks - [ ] 1. Simple mappings - [ ] 2....
This method takes as an input - 1 or more SSSOM tables - one or more crosswalk relations (skos:exactMatch, skos:broadMatch) - a "--hops" option that defines how many times we...
prefix | sssom | bioregistry | issue --- | --- | --- | --- dc | http://purl.org/dc/terms/ | http://purl.org/dc/elements/1.1/ | https://github.com/biopragmatics/bioregistry/issues/307 dcterms | http://purl.org/dc/terms/ | https://dublincore.org/specifications/dublin-core/dcmi-terms/# | https://github.com/biopragmatics/bioregistry/issues/307 neuroname |...
[basic.tsv](https://github.com/mapping-commons/sssom-py/blob/8cfa23ea9c587a037831bf966ed693a93a49f0e1/tests/data/basic.tsv#L1) has the following metadata: ``` #license: "https://creativecommons.org/publicdomain/zero/1.0/" #mapping_set_id: http://w3id.org/sssom/mapping/tests/data/basic.tsv #mapping_tool: "https://github.com/cmungall/rdf_matcher" #creator_id: "cjm" #mapping_date: "2020-05-30" #curie_map: # a: "http://example.org/a/" # rdfs: "http://www.w3.org/2000/01/rdf-schema#" # owl: "http://www.w3.org/2002/07/owl#" # x: "http://example.org/x/" #...
See #196 , #195 On merge, for every `mapping_set_id` A , a 'mapping_source' column with the value of 'A' should be injected.
https://github.com/linkml/linkml-owl I wonder how that will look different? we do a bit of convenience processing on the OWL output..
https://github.com/ontodev/gizmos/blob/master/.github/workflows/python-test-publish.yml