sssom-py
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mapping-commons
Python toolkit for SSSOM mapping format
Right now no treatment of OP mappings.
Currently we do not have sparql test in the [`tests.sh`](https://github.com/mapping-commons/sssom-py/blob/master/tests/tests.sh) file.
If so, we need to take care that this is reinstaed in the deploy-dm goal of the makefile. In this PR I had to fix something in cliquesummary.py that was...
To be able to render an OWL existential restriction correctly from SSSOM, we need to be able to infer whether a predicate is an AP or OP. - 👍 One...
mdutils is a bit clunky but the table generattion stiff works ok this will replace https://github.com/cmungall/obo-scripts/blob/master/tbl2ghwiki
In https://github.com/mapping-commons/SSSOM/pull/69 @cthoyt and I are proposing a 5 tier system for quality mappings. @cthoyt suggests to actually implement the criteria as far as possible in a system similar to...
Right now, each sssom file gets opened twice (once for metadata, once for data). Should be unified into a single function.
We need a method that calls dedupe and then removes higher confidence negative mappings, see also: #56
No functional code should be in cli.py (apart from file extension inference if necessary). Everything else should go into io.py for now, ideally using the exact same name.