sssom-py
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mapping-commons
Python toolkit for SSSOM mapping format
## Changes Ontoportal CLI test - Update: Add testing off ontoportal JSON to CLI tests - Update: run_convert() to support multiple output formats
## Overview Not sure how my setup is different; I think I'm the only one w/ this issue. But when I do a `poetry install`, I get a message at...
## Overview There are a few different issues related to FHIR, and I'd like to group them together. ## Sub-issues - #253 - #254 - https://github.com/timsbiomed/issues/issues/3
Blocked by: - [ ] https://github.com/linkml/linkml/issues/2115 (not imperative, but annoying - [x] https://github.com/linkml/linkml/issues/2164 (important, needs fixing) - [x] https://github.com/linkml/linkml/issues/2116 - [x] https://github.com/linkml/linkml/issues/2117 (not really fixed, see https://github.com/orgs/linkml/discussions/1975, but I implemented...
Context: The original dataclass parser catches this: ``` WARNING:sssom.parsers:One mapping in the mapping set is not well-formed, and therfore not included in the mapping set ({'subject_id': 'NANDO:2200355', 'subject_label': 'Isolated ACTH...
## Overview There is a typo, `therfore` in `WARNING:sssom.parsers:One mapping in the mapping set is not well-formed, and therfore not included in the mapping set...`. ## Related - #500
## Overview Given that built-in prefix maps [are not required](https://github.com/mapping-commons/sssom/issues/365#issuecomment-2124317653) unless they appear somewhere in the mapping set, it would be nice to have a way to give users the...
addresses #534 ## Changes - Add: TestWrite.test_missing_entries()
## Overview Addresses part of #513. Creates a test to check for missing entries in `prefix_map` / `curie_map` after initializing `MappingSetDataFrame`.