Michael Jahn

icon indicating a website link https://m-jahn.github.io/ icon indicating an email [email protected]

icon company Max Planck Unit for the Science of Pathogens icon location Berlin, Germany icon location Bioinformatics researcher @MPUSP - Max Planck Unit for the Science of Pathogens. Postdoc at Science For Life Lab, Stockholm. PhD from University of Leipzig.

Results 98 comments of Michael Jahn

Added a small function 'GetGeneGroupPadded' to avoid overlapping gene labels.

Thanks @abelew I will test this asap.

ggplot2 dependency deprecation

Dear @Jiaquan-Woo , I fully agree, many things about this package are cluttered or outdated. In general, code in this package is highly repetitive and probably not according to today's...

gene.name="" and gene.name="Ensembl ID" fail

As for all the issues you opened, can you paste the code that led to the respective error messages? Ideally a reproducible example -- if this problem can not be...

Using binning causes annotations to fail

Hi Ian, can you provide a reproducible example?

Using binning causes annotations to fail

thank you! Do you also happen to have the code chunk you were running that produced this error?

Using binning causes annotations to fail

I just assumed the params you used for loading your bam file and I can already confirm the bug with the coordinates. Also strand information seems to get missing. To...

Using binning causes annotations to fail

dear @ijhoskins you can use the the latest version from this development branch https://github.com/m-jahn/ggcoverage/tree/bug_fixes and see if it solves your issue. I have tested various fixes with your data and...

plot showing broken peak, not continuous

Dear @wangxu1990, this is a known bug/phenomenon of plotting many small "bars" (essentially lines) next to each other. The geom_coverage functions do not plot a continuous horizon like graph, but...