Michael Jahn

Hi Pedro, you are correct, there is no builtin method to color-code the `geom_peak` output. I tried to make some changes to this function that allows color-coding. You can check...

I see what you mean. No problemo, there are no extra parameters required. The fantastic thing about `ggplot` is that you can always change/override existing theme elements with new commands....

HI @harrymatthews50 In the original example it reads `container: "oras://ghcr.io//:"`, not `containerIZED:` as in your example. See the instructions in the README of the workflow template or in the snakemake...

Yes, all of you are correct. There are several ways of using containers. The standard and most practical way (from my perspective) is to first `snakemake --containerize` your workflow and...

In a way it seems counter-intuitive to not have the environments created in the container right from the start. But my take is that you combine several advantages of both...

@bayraktar1 After reading the documentation again I became confused about the actual difference between `container:` and `containerized:` directives. I have done some tests now, testing both directives with different snakemake...

Hi Dan, Snakemake does usually not expect Apptainer/Singularity to be present unless you run in `--sdm apptainer/singularity` mode, right? So basically my question is, do you *want to run* apptainer...

this is somewhat related to the logging behavior of snakemake, so maybe @cademirch can say something about current developments? There are at least different logging plugins which can make your...

My personal opinion is that the information should be more compressed. I would only like to see a tabular summary of running and accomplished jobs as e.g. nextflow shows. The...

Doesn't seem to be a thing in current Firefox on Ubuntu. --- Maybe something specific to your setup? Theoretically the sphinx built website should scale to any type of screen....