Michael Jahn

icon indicating a website link https://m-jahn.github.io/ icon indicating an email [email protected]

icon company Max Planck Unit for the Science of Pathogens icon location Berlin, Germany icon location Bioinformatics researcher @MPUSP - Max Planck Unit for the Science of Pathogens. Postdoc at Science For Life Lab, Stockholm. PhD from University of Leipzig.

Results 98 comments of Michael Jahn

Use of repel algorithm in other packages?

Just a follow-up on this: I am also interested in having `repel_boxes2` exported in ggrepel, so that other functions/packages can use it. Specifically, I'm using a lot of `lattice` plots...

Use of repel algorithm in other packages?

Great! That said, are you @slowkow as the `ggrepel` maintainer still interested in having `repel_boxes(2)` exported according to your suggestion in your previous comment? Since I did it now for...

Use of repel algorithm in other packages?

Thanks @slowkow, I think I will give it a try.

`bin.size` parameter in `LoadTrackFile` has no effect when normalization is "none"

- can also add feature to take strand information from bam files into account

`bin.size` parameter in `LoadTrackFile` has no effect when normalization is "none"

gets fixed with 8c537bbc13c6a95ebfa3f6d6c44c495e0a21af2f

Ruby Initialization Failed

This worked for me too. Replacing the more recent `openjdk-19-jre` with `openjdk-11-jre` did the trick.

Feature request: show multiple data lanes / tracks synchronized with a genome view

Thanks for addressing this!

Non-eukaryotic data and input files?

Hi, sorry for late reply, but now I looked into that issue. The problem is that the `LoadTrackFile` function is currently quite inflexible. Many options are hardcoded towards human data....

Non-eukaryotic data and input files?

Will be fixed with commit 8c537bbc13c6a95ebfa3f6d6c44c495e0a21af2f

Overlapping labels

issue will be fixed with next release; in the mean time you can use the latest commit from my dev branch.