Nikki Lukasko

FastaAlternateReferenceMaker outputs empty fasta files for select genes from select VCF files

9

I am attempting to create fasta files from specific regions in approximately 270 VCF files. For every other region/gene I've looked at, I have not had this issue. For one...

Difference between clusters and smCOGs from antismash?

4

**Are you using the latest release?** 1.8.15 **Describe the bug** Can you please explain the difference between "clusters" and "smCOGs" parsed by antismash? Are "clusters" actually protoclusters? I could not...

Species is recognized as "anidulans"?

6

**Are you using the latest release?** v1.8.15 **Describe the bug** I am new to this and am having a hard time understanding the differences between --species, --busco_seed_species, and --augustus_species. I...

Error: [] finished abnormally, OS return value: -9

1

### Description of bug Job is dropping, but I think I should have enough memory. Not sure what else could cause this? == Error == system call for: "['/opt/software/SPAdes/3.15.2-GCC-10.2.0/bin/spades-hammer', '/mnt/ufs18/rs-008/Hausbeck_group/Lukasko/BotrytisDNASeq/CCR7/SPAdes_assemblies/BM16_assembly/corrected/configs/config.info']"...