Nikki Lukasko

I am also trying to remove the set sizes or move them to the right side, but nothing is working. I don't believe the argument "set_sizes" in the link above...

I am also having the same issue. What is the exact input file type or path supposed to be for --signalp ? ``` --signalp predict_results/signalp/prediction_results.txt \ ``` ``` Existing SignalP...

I am running funannotate v1.8.15 and yes, signalp6 outside of funannotate. Here is the annotate log file: [B5_signalp_annotate_slurm.txt](https://github.com/nextgenusfs/funannotate/files/11807957/B5_signalp_annotate_slurm.txt) Here are the signalp results from annotate_misc:  [signalp.results.txt](https://github.com/nextgenusfs/funannotate/files/11807959/signalp.results.txt) If the issue...

Thank you for the quick response. I looked at the html from the antismash v6 results, and it also reports 44 regions (aka clusters, per their definition). I am confused...

Great, I think we are on the same page. I also noticed the same thing when trying antismash v7. If this is of any use, here is the range reported...

I am having the same issue when I go to annotate: ``` module purge conda activate funannotate cd /mnt/research/Hausbeck_group/Lukasko/BotrytisDNASeq/CCR7/Predict_Annotate for infile in AI* do base=$(basename ${infile} _fun) cd ${base}_fun funannotate...

I am wondering the same thing as above. I have used tantan to mask repeats because I am not sure of a better database for fungi. Any suggestions?

Thank you for the quick response! Do you know of another tool that can do the same (or very similar) task for the time being?

If it's helpful, I can provide a couple samples for you to test. The VCFs that worked/didnt work appear to be homologous in the region that I specified (according to...

Sure. If you provide your email, I can send a couple VCFs that worked/did not work along with the reference genome?