ablab
Error: [] finished abnormally, OS return value: -9
Description of bug
Job is dropping, but I think I should have enough memory. Not sure what else could cause this?
== Error == system call for: "['/opt/software/SPAdes/3.15.2-GCC-10.2.0/bin/spades-hammer', '/mnt/ufs18/rs-008/Hausbeck_group/Lukasko/BotrytisDNASeq/CCR7/SPAdes_assemblies/BM16_assembly/corrected/configs/config.info']" finished abnormally, OS return value: -9
Genome is approx 50Mb and the input fastq file are both 1.7G.
Thanks in advance.
spades.log
params.txt
SPAdes version
SPAdes 3.15.2
Operating System
Linux-3.10.0-1160.80.1.el7.x86_64-x86_64-with-glibc2.2.5
Python Version
Python 3.8.6
Method of SPAdes installation
conda
No errors reported in spades.log
- [X] Yes
Hello
It's highly unlikely it's a memory limit in this particular case. Something killed your SPAdes job. Likely your system administrator could provide more insights on this.
