Lorena Pantano comments

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                                            Lorena Pantano

Extract the genes of each group pattern

this function is only a proxy for plotting, so `res3$normalized` contains all the information you are seeing. Normally the column `cluster` has the group number you see in the plot,...

`degCovariates`: breaking change in dplyr filter code

Hey, Can you let me know the version of dplyr? In Bioconductor seems all alright: https://bioconductor.org/packages/release/bioc/html/DEGreport.html

`degCovariates`: breaking change in dplyr filter code

Hi, I may have found the error. I push to master, if you can test it and let me know, it would be great. CC @vbarrera

`degCovariates`: breaking change in dplyr filter code

I think this is fixed now in the latest commit. I will wait for you to test. thanks

Extracting Gene-Gene distance matrix from DegPatterns

Hey, sorry for the late reply. I think the best way is to do it by yourself since you know the genes. ``` .summarize_scale

Extracting Gene-Gene distance matrix from DegPatterns

mm, not sure what is happening. are you using the function as `.summarize_scale` with a dot in front of the function? (assuming you have copy/paste my code) i use the...

report problem

Hi, as well you can try the new version of the report, you can download: https://github.com/lpantano/seqcluster/blob/master/seqcluster/templates/report.rmd and modify `root_path` to try it.

report problem

nice, ok when you have more samples let me know, I am interesting in get that working in your case, because it should work nicely with these number of samples....

report problem

Hi, I think you had an older version when you ran that. You can change that part of the code, or you can remove the final folder, and re-start to...

report problem

can you tell me the exact line where you find the problem with that? because if it is in the adapter plots, it could be because you don't get any...