Lorena Pantano

Hi, Normally these errors are temporals, did you try today. In other hands, yes, you can install those packages using pip. Just in case, can you try this: ``` conda...

Hi, sorry about the issues. i am trying to reproduce. Can you paste the whole output of the command I sent you? For instance this is my output: ``` root@2639a4aa2851:/#...

Hi, that seems a connectivity problem.Can you download the package that you get the error: https://conda.anaconda.org/conda-forge/linux-64/gettext-0.19.7-1.tar.bz2 For me is working. Not sure what is going on. Can I know from...

Sorry I was unable to help, I am currently preparing a docker instance with everything installed in case that help for you. It will be available tomorrow, I’ll chime in...

I created a docker image in case you use that: you can install it with docker pull lpantano/smallrna:latest Cheers > On Dec 13, 2017, at 8:07 AM, Lorena Pantano wrote:...

Hi, Thank you for the question, I don't think the number can be interpreted like that. The ordering of the clusters are not based on distance. I think there are...

Mmm, it is a good point, but normally the package install the version that is compatible with the R version if you go with BiocManager. How are you trying to...

Hi, If you want to plot only one cluster, you can subset the data.frame containing only that cluster and then use the function. I have never tried that, let me...

Hi, sorry about the issues. Not sure exactly what is going on. Can you send me the files inside `log` folder and the `ls` of the final folder? That file...

Hi, I think you don't have the small RNA data installed. Can I ask whether you are using bcbio_nextgen.py directly or using bcbio through other wrapper, like bcbio_vm.py, etc? To...