Lorena Pantano
Lorena Pantano
As per user request: >I am trying to use the DEGreport package to plot timecourse data using degpattern. I get really good patterns, please see attached(file attached: Summary_clusters_Group). However I...
Talk to David to see if we can add this to here. Example in conference was for miRNA, any count data can be used.
Avoid asking for extra information. PCA should be able to plot only with count matrix
the tools only compare one group vs other. The idea will be to upgrade so it is able to compare any FC from any design like interactions or after blocking...
https://github.com/lpantano/seqcluster/blob/38297c9b158a260da4fef561fefe831892e2544d/seqcluster/make_clusters.py#L50
think about it: https://www.ncbi.nlm.nih.gov/pubmed/27307639
Hi @naumenko-sa, for the [problem](https://github.com/chapmanb/bcbio-nextgen/issues/1395) with the report we can discuss here. That report is a template that won't work in all analysis sadly. Can you tell me what would...
https://gist.github.com/sixtenbe/1178136 https://pypi.python.org/pypi/pypeaks/0.2.6