Lorena Pantano
Lorena Pantano
@klai001, you may want to try this new version, it may do what you expect. You will need to install with `BiocManager::install('lpantano/DEGreport')`, hopefully there is no conflicts.
I forgot to say, that you would need to get the gene names first and sort them in the order that you wish, and then use the `genes=` parameter in...
Hi, I cannot see the plots. But you are not going to get the same genes with this two commands. The first plot the top significant genes according to p-adj...
Hi, thank you for your question. That parameter is the minimum size of the sequences that will be kept in the output file. In this case, sequences less than 15nt...
I forgot to answer that, it is the minimum counts that the sequences need to have to be kept in the output file.
Hi @wangmhan , Can you post the exact error you get? If you try the example in the man page, does it work? If you paste here all the output...
I see, are you using R studio, this happens in general when the Panel for figures is too small. Can you try to increase the size of that panel? It...
Hi, Thanks for reporting this. Can you tell me the version of the package and R/Bioconductor you are using?
Hi, I was able to reproduce when installing from github, I am trying to fix this. Can you trying installation directly from Bioconductor: `BiocManager::install("DEGreport")` Thanks!
Hi, It is indeed a complex discussion. Without knowing your groups for your example I don't know if I would be able to help a lot. I had one study...