loraince

Is there a proper way to generate bigwig file from bed output?

4

I need to use deeptools to analysis my bulk ATAC-seq data. However, deeptools require a bigwig (.bw) file for most of the analyses. I have tried two pipelines to generate...

Weird length of mapped fragments of ATAC-seq data

8

Chromap is indeed an ultrafast tool. Thanks for developing and this method. However, I have encountered two problems when I using chromap with scATAC-seq data. The first one is that...

INFO @ Sat, 26 Feb 2022 11:52:20: #1 read fragment files... INFO @ Sat, 26 Feb 2022 11:52:20: #1 read treatment fragments... Traceback (most recent call last): File "/miniconda3/envs/MAESTRO/bin/macs2", line...