Laura Harris
Laura Harris
Export entire Oracle database as sql dump and share via OwnCloud or ftp if OwnCloud has insufficient storage. Submitter names & emails must be removed for data protection (note, publication...
Since publications can now be assigned a status in Depo-curation, all existing publications should be assigned a status and curator that matches the status and curator in the curation app....
Data associated with this project https://www.medrxiv.org/content/10.1101/2023.12.06.23299426v1 has been shared with Open Targets and needs ingesting into the GWAS Catalog. The data is presented in separate files for each chromosome, looks...
I did some analysis of the latest association downloads file (2023-10-29) according to the following steps 1. Filtered for associations with no data in on CHR_ID column 2. Filtered on...
GCST002047 was not harmonised successfully because our harmonisation pipeline cannot recognise the column “Effect_Allele”. The harmonisation pipeline reads the “effect_allele” column in the input file to harmonise the variant. However,...
- Given there are new PMIDs added in depo-curation using the new software feature - the PMIDs should be synched to the curation database - Then the import process can...
After completing all required steps of curation in depocuration, curators must be able to release studies for publication with a single action. Once triggered, studies are imported to Oracle, associations...
Several GWAS Catalog documentation pages include tables. These appear nicely formatted in the github preview, but are difficult to read in production UI because of lack of borders, padding and...
According to the mapping pipeline, if there is no direct mapping for a gene, the mapping pipeline will retrieve the nearest upstream and downstream gene within 50kb. Mapped upstream and...
Curators have several scripts that are used routinely, documented here: https://www.ebi.ac.uk/seqdb/confluence/display/GOCI/Using+the+Codon+Cluster This page needs updating with any changes to usage following the migration to SLURM.