Rob Edwards
Rob Edwards
Hi Is it possible to concatenate multiple premade sketches and then search against them in a single search? something along these lines ``` dashing sketch *.fasta cat *.hll > combined.hll...
``` $ abricate SYNOPSIS Find and collate amplicons in assembled contigs AUTHOR Torsten Seemann (@torstenseemann) ``` Crap, did I download the wrong code? I was looking for the antibiotic resistance...
Trying to install progressiveCactus on a centOS6 system, I had many problems: Building the submodules, the supplied kyotocabinet and kyototycoon do not build. I had to download the source codes...
We need to output the models in SBML and/or JSON format
We need to implement a mechanism to correct role mapping from RAST to the biochemistry tables. This file [role_corrections.txt](https://github.com/linsalrob/PyFBA/files/272439/role_corrections.txt) has a two column table with RAST role and Biochemistry role....
Provide an option to write the singleton reads to a single file. There is no real reason to keep them separate, though most tools can take multiple singleton reads.
Extract the locations from these genomes and add them to our GenBank files as appropriate: http://phaster.ca/statistics#table4
Very often contig breaks in draft genomes occur within prophages. This is because the prophage contains repeat regions (like IS elements), the prophage has unusual coverage (e.g. because it is...
# Issue Report ## Please describe the issue: During installation of MinKNOW or restarting the computer, `/opt/ont/dorado/bin/dorado_basecall_server --version` hangs indefinitely and the minknow service does not start. ## Steps to...
Hey Mike I downloaded BamM today and tried to install it on CentOS6.6 (with python2.7, python2.7 numpy, samtools and bwa tools): ``` $ git clone https://github.com/minillinim/BamM.git $ cd BamM $...