Rob Edwards

Robs manual for the computational genomics and bioinformatics class.

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Code from the Edwards lab, including bioinformatics, image analysis and more. All this code is created and maintained by folks at Rob Edwards' bioinformatics lab at Flinders University

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Match up paired end fastq files quickly and efficiently.

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PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied annotations of the data sets can not be trusted, and so PARTIE all...

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Prediction of prophages from bacterial genomes

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Comparisons of multiple different prophage predictions

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A python implementation of flux balance analysis to model microbial metabolism

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Get, parse, and extract information from the SRA metadata files

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Sequencing and analysis of crAssphage regions from around the globe

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This is the complete code base used in Robert A. Edwards, Katelyn McNair, Karoline Faust, Jeroen Raes, and Bas E. Dutilh (2015) Computational approaches to predict bacteriophage–host relationships. FE...

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