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Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

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Memory overrun issue in bwasw (via valgrind)

While investigating #108, the Debian folks [worked around](https://salsa.debian.org/med-team/bwa/-/commit/521729be5aef886451145b8fbd0e30c57a5eb184#ea73ff766eab6ddd534a3d3d24c161e812926862) (see _debian/patches/fix_heap_block_overrun_) a heap overrun in the `bwasw` command: ``` valgrind ./bwa bwasw -f /dev/null 00-optrApE349.fas 2708-UW15005_S1_L001_R[12]_001.fastq.gz … … … ==1581== Invalid...

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Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

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