bwa
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lh3
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
Hi Heng, Can bwa.kit be used for HLA-DPB1 typing ? It seems that the database in floder 'resource-human-HLA' should make some modification in order to do HLA-DPB1 typing. Could you...
Hi, I create a pull request(#362) for below issue. ksw_global2 calculate z value from beg to end. Accessing an uncalculated area has no choice but to read unknown data. (...
Hi, I make a pull request (#361 )for below issue. It calculated h from beg to end. Because of the applying band, sometimes beg can grow bigger than end. Then...
Is there anything preventing the addition of chm13v2 as an option in bwakit to download the [recent GenBank release](https://www.ncbi.nlm.nih.gov/assembly/GCA_009914755.4)? Perhaps due to #363? As a big fan of bwakit, I...
Building BWA has long been limited to x86-64 due to the unconditional usage of SSE2 SIMD intrinsics in _ksw.c_'s `ksw_u8()` and `ksw_i16()` functions. This PR adds Neon implementations of these...
I am re-aligning the same .fastq files to both hg38 and CHM13 to compare the alignments. My hg38 alignment runs fine but CHM13 is getting this error: `[E::bwa_idx_load_from_disk] fail to...
I have downloaded the nt data base from NCBI , for which the size is about 90G, I want to create a index file with commands as follows: bwa index...
add break condition to making cigar string : ksw_global2 calculate z value from beg to end. Accessing an uncalculated area has no choice but to read unknown data. ( Since...
add condition to BSW in case of reversing : It calculated h from beg to end. Because of the applying band, sometimes beg can grow bigger than end. Then skip...