Lauren Coombe

Glad it's working for you now! Huh strange - We've tested reads from Dorado before, but perhaps not with this header format. Thanks for that info, we'll take a look...

Thanks for confirming, @Oieswarya! Looking at your command, your target genome looks to be ~3Gbp, so yes that should be enough memory. In the `goldrush_intermediate_files` directory could you try just...

Hi @Oieswarya, So that indicates that the run went just fine (I don't see any errors), so unsure why you were getting that error before? You could try re-launching the...

That's right! Fingers crossed it'll work - if so, it could have been a transient server issue.

Are you running that command in the same folder? It doesn't appear to be starting in the right place (ie. it is re-running the goldrush-path command) - but regardless, I...

No worries! Just to clarify - I was asking about you sharing your full log files from the failed run, not your reads :) And I know you're using the...

Hi @Oieswarya, Yes, if a sample that worked before for you isn't working now, I would suggest re-installing GoldRush. If you are using conda, the easiest way to do this...

Hi @desmodus1984, Yes, that is right, we recommend using Mash to estimate the divergence, and then setting that parameter to the max (%) estimated. For an initial run, this is...

Thanks for reporting, @rubenolbrechts! It’s interesting because that doesn’t seem to correspond to the igraph documentation for that function (https://igraph.org/python/versions/latest/api/igraph.Graph.html#get_all_simple_paths). Could I ask what documentation you used to change that...

Thanks for that! Yes, it seems like it could be an old igraph? Could you take a look at what version it is, out of interest (`conda list`)? I see...